Tuesday, July 12, 2011

Can Somebody Please Translate This?


Denise O'Leary has discovered a paper that was written up in Science News Daily: Chromosomes' Big Picture: Similarities Found in Genomes Across Multiple Species; Platypus Still out of Place. She seems to think this causes a problem for evolution.

I couldn't make head nor tail of the posting on Uncommon Descent [Most life forms show S pattern in chromosome lengths, guess which one doesn’t?] but that didn't surprise me because, after all, it was written by an IDiot. However, I was a bit surprised by the Science News report because I couldn't understand it either.

So I looked at the original paper. Here's the reference and abstract.
Li, X., Zhu, C., Lin, Z., Wu, Y., Zhang, D., Bai, G., Song, W., Ma, J., Muehlbauer, G.J., Scanlon, M.J., Zhang, M., and Yu, J. (2011) Chromosome Size in Diploid Eukaryotic Species Centers on the Average Length with a Conserved Boundary. Mol. Biol. Evol. 28: 1901-1911. [doi: 10.1093/molbev/msr011]

Abstract

Understanding genome and chromosome evolution is important for understanding genetic inheritance and evolution. Universal events comprising DNA replication, transcription, repair, mobile genetic element transposition, chromosome rearrangements, mitosis, and meiosis underlie inheritance and variation of living organisms. Although the genome of a species as a whole is important, chromosomes are the basic units subjected to genetic events that coin evolution to a large extent. Now many complete genome sequences are available, we can address evolution and variation of individual chromosomes across species. For example, “How are the repeat and nonrepeat proportions of genetic codes distributed among different chromosomes in a multichromosome species?” “Is there a general rule behind the intuitive observation that chromosome lengths tend to be similar in a species, and if so, can we generalize any findings in chromosome content and size across different taxonomic groups?” Here, we show that chromosomes within a species do not show dramatic fluctuation in their content of mobile genetic elements as the proliferation of these elements increases from unicellular eukaryotes to vertebrates. Furthermore, we demonstrate that, notwithstanding the remarkable plasticity, there is an upper limit to chromosome-size variation in diploid eukaryotes with linear chromosomes. Strikingly, variation in chromosome size for 886 chromosomes in 68 eukaryotic genomes (including 22 human autosomes) can be viably captured by a single model, which predicts that the vast majority of the chromosomes in a species are expected to have a base pair length between 0.4035 and 1.8626 times the average chromosome length. This conserved boundary of chromosome-size variation, which prevails across a wide taxonomic range with few exceptions, indicates that cellular, molecular, and evolutionary mechanisms, possibly together, confine the chromosome lengths around a species-specific average chromosome length.
Here's the challenge. Read the abstract and try and guess what important scientific point the authors are making that deserves publication in a molecular evolution journal. For extra points, read the entire article and see if you can improve your guess. You'll be impressed when you read the discussion and it all becomes clear (not!)


Monday, July 11, 2011

Polaris 25 - The Skeptical Track


Polaris 25 will take place this coming Friday, Saturday, and Sunday (July 15-17) at the Sheraton Parkway Toronto North in Richmond Hill, just north of Toronto. It will celebrate the 45th anniversary of Star Trek. Three of the actors from Stargate SG-1/Stargate Atlantis will be there—that's my favorite TV series (now in re-runs).

The Centre For Inquiry and its Committee for the Advancement of Scientific Skepticism (CASS) has been invited to present a Skeptical Track at the convention. The four speakers are ....
  • Me (Larry Moran): "What’s the Difference Between Science and Science Fiction?"

  • Jeffrey Shallit: "Misinformation Theory: How Creationists Abuse Mathematics."

  • Chris Hassall: "The Evolution of Superstition: People, PCs and Pigeons."

  • Alex Manafu: "Could Science Prove the Existence of God? (Or, Must Science Be Naturalistic?)"
For more information see Jeffrey Shallit's blog Recursivity: See me at Polaris 2011 in Toronto - July 16 and Michael Kruse's blog at Skeptic North: Skeptical Track at Polaris 25.


Friday, July 8, 2011

V. BARTOLETTI, La corrispondenza di Heronino nei papiri fiorentini

La corrispondenza di Heronino nei papiri fiorentini
(Osservazioni e note critiche ai testi)
Tesi di Laurea di Menotti Stanghellini
Relatore: Chiar.mo Prof. V. Bartoletti
Anno Accademico 1957-58

Heroninus Archive in general at Trimegistos

Thursday, July 7, 2011

NYU Excavations at Amheida in Egypt's Dakhleh Oasis



Fifth International Society for Arabic Papyrology Conference, Carthage, March 28-31, 2

Fifth International Society for Arabic Papyrology Conference, Carthage, 
March 28-31, 2012

The fifth ISAP conference will be hosted by the Tunisian Academy of 
Sciences, Letters and Arts, Beït Al-Hikma (/www.baitelhekma.nat.tn) in 
Carthage. It will be organized by the International Society for Arabic 
Papyrology in cooperation with the Institut français d’archéologie 
orientale (Ifao) in Cairo.

The conference will start on the evening of Wednesday, March 28, and 
continue through Saturday, March 31. The programme will include 
20-minute lectures presenting text editions or studies based on 
documentary material from the Islamic medieval world, workshops in which 
unedited Arabic documents will be presented, and evening lectures. There 
will also be the opportunity to visit the National Library of Tunisia 
(Tunis) and the National Museum of Islamic Arts of Raqqada (Kairouan), 
which hosts the only collection of Arabic payri in Tunisia, and 
important early Islamic manuscripts written on parchment.

Participants are supposed to be or become members of the International 
Society for Arabic Papyrology.

Summary

The fifth conference of the International Society for Arabic Papyrology 
(ISAP) will take place at the Tunisian Academy of Sciences, Letters and 
Arts, Beït Al-Hikma, in Carthage.

It will bring together scholars using documentary evidence to study the 
history of the early Islamic world, including Arabic, Coptic, and Greek 
papyri, paper and other documents, as well as epigraphic and numismatic 
material. Participants may present their research either as 20-minute 
papers or within the context of workshops on Greek, Coptic, and Arabic 
papyrology and palaeography.

Conference Format

The Conference will include 1) text workshops and 2) sessions for the 
presentation of 20-minute papers and 3) evening lectures at local 
research institutes. Although the "official language" of the conference 
is English, papers and workshops may be given in English, French, 
German, or Arabic.

Text Workshops

These workshops will focus on a single text, or group of texts, to be 
circulated in advance. The texts used may be in any of the languages of 
the documentary sources relevant to the history of early Islamic Egypt 
and the wider Mediterranean world (Greek, Coptic, or Arabic). A 
translation of the text should also be circulated to allow for the 
widest possible participation. The presenter will have the first thirty 
minutes to introduce the text and its problems, and then the remaining 
hour will be spent in discussion.

Paper Sessions

There will be several sessions during which three or four 20-minute 
papers, followed by questions and discussion, will be read. While the 
topics addressed need not focus exclusively on documentary evidence, it 
is expected that documentary sources will be an integral and substantive 
part of each paper.

Abstracts and Handouts

The deadline for 400-word abstracts is November 1 2011. Please send 
abstracts to Sobhi Bouderbala (sbouderbala at ifao.egnet.net). If your 
presentation will require audio-visual equipment of any kind, please 
describe what is needed. Notification regarding the acceptance of 
proposals will be made by the end of November 2011.

Also, please send a copy of all texts and translations to be used in the 
text workshops by 15 February 2011. These will be made available to 
participants.

Registration

There will be no conference fee charged. Participants who currently have 
no membership should renew their membership in Carthage on the first day 
of the conference. Payments have to be made in cash in Euros, dollars or 
Tunisian dinars. If you are interested in joining ISAP, information can 
be found at the ISAP sign-up website.

Please send a notice of intent to participate in the Conference to one 
of the conference organizers, Petra Sijpesteijn (p.m.sijpesteijn at 
hum.leidenuniv.nl) or Sobhi Bouderbala (sbouderbala at ifao.egnet.net)

Travel Subsidies

It is hoped that the Conference will be able to offer a few awards for 
scholars not able to get institutional subventions for travel to Carthage.

Please let us know as soon as possible whether you will be in need for 
such sponsoring.
Conference Organizers

If you have any further questions about the Conference, please contact: 
Petra Sijpesteijn (p.m.sijpesteijn at hum.leidenuniv.nl) or Sobhi 
Bouderbala (sbouderbala at ifao.egnet.net) or check the conference 
website (http://www.ori.uzh.ch/isap/Conference2012.html).

Tuesday, July 5, 2011

Carnival of Evolution #37



This month's Carnival of Evolution (37th version) is hosted by William, a 13 year old budding evolutionist who lives in Petawawa, Ontario, Canada [Carnival of Evolution #37-Happy Canada Day!]. His blog is The Lessons of Evolution.

The next edition will be hosted right here on Sandwalk! (Canadians are taking over the world.) Email me if you have posted something on evolution that deserves to be in the next carnival. Or just send me a link if you come across something posted by someone else. (l(dot)moran(at)utoronto(dot)ca)

I even accept postings from adaptationists and (maybe) evolutionary psychologists. I also promise to give serious consideration to postings from (some) philosophers.

There will be a new surprise category in next month's carnival—watch for it!



The Scientific American Blog Network


Today marks the launch of another blog network. This one is The Scientific American Blog Newtork. Bora Zivkovic is the man behind it.

I read about thirty blogs on a regular basis. Some of them have migrated two or three times over the past five years and I always follow them because they are good blogs. I really don't care whether the blogs I follow are part of a network or not. I don't read the other blogs in a network because my aggregator gives me a direct feed.

What's the purpose behind belonging to a blog network? Does it provide something that you can't get by being an independent blogger? Is it money? Are there any downsides other than the fact that you are lending your name to support for a profit making corporation? If you're supporting a magazine like Discover, Seed (now dead), Nature, or Scientific American does it mean that you stand behind whatever they print?

The thing I find most annoying about commercial blogs is the advertising—some of which is contrary to what's being posted. Is the "profit" to the blogger really significant enough? Maybe it is for PZ Myers but the income for someone like me was peanuts when I last explored that option.